Meme

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Last Modified: 07/14 17:49

Description

MEME allows discovery of motifs (highly conserved regions) in groups of related DNA or protein sequences.

Version

• 3.5.7

Authorized Users

• circe account holders

Platforms

• circe cluster

Local Documentation

Modules

Meme requires the following module file and some prerequisites to run:

• apps/meme/3.5.7
• Prerequisites: compilers/pgi/7.0-7.x86_64 openmpi/1.2.6-x86_64-pgi-7.0-7

To run Meme on the cluster, ensure that you use module initadd to make the changes persistent. See Modules for more information.

Submitting a Job

A sample sge script is provided below. For more information on submit scripts, see GridEngine Submit Techniques:

#!/bin/bash
#$ -N meme_test
#$ -cwd
#$ -pe ompi* 4
#$ -o output.$JOB_ID
#$ -j y
#$ -l p_low=true
#$ -l h_rt=8:00:00

sge_mpirun /opt/apps/meme/bin/meme <ARGS>